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"Won Gi Yoo"

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"Won Gi Yoo"

Brief Communication

We present a nearly complete mitochondrial genome (mitogenome) of Hymenolepis diminuta from a Danish isolate, which was reassembled and comprehensively annotated using whole-genome sequencing data retrieved from the Sequence Read Archive (accession No. ERS056110). Although 2 mitogenomes of H. diminuta have previously been submitted to GenBank (accession No. AP017664, Danish isolate; NC_002767, putative German laboratory strain), the former lacks noncoding regions, while the latter harbors relatively short repeat units. Our newly reconstructed mitogenome is 14,090 bp long, comprising 12 protein-coding genes, 22 transfer RNA genes, 2 ribosomal RNA genes, and a 643-bp noncoding region containing 7 tandem repeat units. The annotated sequence has been deposited in the Third Party Annotation database in GenBank (accession No. BK071817). Phylogenetic analysis based on mitogenomic sequences confirmed a close relationship between H. diminuta and Hymenolepis nana. This improved mitogenome sequence represents a valuable resource for comparative mitogenomic and phylogenetic investigations within the families Hymenolepididae, Taeniidae, and Diphyllobothriidae.
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Original Articles
The anti-amoebic activity of Pinus densiflora leaf extract against the brain-eating amoeba Naegleria fowleri
Hương Giang Lê, Woong Kim, Jung-Mi Kang, Tuấn Cường Võ, Won Gi Yoo, Hyeonsook Cheong, Byoung-Kuk Na
Parasites Hosts Dis 2024;62(2):169-179.
Published online May 27, 2024
DOI: https://doi.org/10.3347/PHD.23103
Naegleria fowleri invades the brain and causes a fatal primary amoebic meningoencephalitis (PAM). Despite its high mortality rate of approximately 97%, an effective therapeutic drug for PAM has not been developed. Approaches with miltefosine, amphotericin B, and other antimicrobials have been clinically attempted to treat PAM, but their therapeutic efficacy remains unclear. The development of an effective and safe therapeutic drug for PAM is urgently needed. In this study, we investigated the anti-amoebic activity of Pinus densiflora leaf extract (PLE) against N. fowleri. PLE induced significant morphological changes in N. fowleri trophozoites, resulting in the death of the amoeba. The IC50 of PLE on N. fowleri was 62.3±0.95 μg/ml. Alternatively, PLE did not significantly affect the viability of the rat glial cell line C6. Transcriptome analysis revealed differentially expressed genes (DEGs) between PLE-treated and non-treated amoebae. A total of 5,846 DEGs were identified, of which 2,189 were upregulated, and 3,657 were downregulated in the PLE-treated amoebae. The DEGs were categorized into biological process (1,742 genes), cellular component (1,237 genes), and molecular function (846 genes) based on the gene ontology analysis, indicating that PLE may have dramatically altered the biological and cellular functions of the amoeba and contributed to their death. These results suggest that PLE has anti-N. fowleri activity and may be considered as a potential candidate for the development of therapeutic drugs for PAM. It may also be used as a supplement compound to enhance the therapeutic efficacy of drugs currently used to treat PAM.

Citations

Citations to this article as recorded by  Crossref logo
  • A xanthone O-glucoside isolated from Iris setosa Pall. ex Link exhibits promising anti-amoebic activity against the brain-eating amoeba Naegleria fowleri
    Hương Giang Lê, Buyng Su Hwang, Ji-Su Choi, Yong Tae Jeong, Tuấn Cường Võ, Minkyoung Cho, Yeonchul Hong, Jeong Ho Kim, Young Taek Oh, Byoung-Kuk Na
    Phytomedicine.2025; 147: 157199.     CrossRef
  • From nose to neurons: The lethal journey of the brain-eating amoeba Naegleria fowleri
    Arindam Mitra, Débora Brito Goulart
    The Microbe.2025; 8: 100537.     CrossRef
  • 3,630 View
  • 97 Download
  • 2 Web of Science
  • Crossref
Mapping of the Complement C9 Binding Region on Clonorchis sinensis Paramyosin
Jung-Mi Kang, Hương Giang Lê, Tuấn Cường Võ, Won Gi Yoo, Woon-Mok Sohn, Byoung-Kuk Na
Korean J Parasitol 2022;60(4):255-259.
Published online August 24, 2022
DOI: https://doi.org/10.3347/kjp.2022.60.4.255
Heliminthic paramyosin is a multifunctional protein that not only acts as a structural protein in muscle layers but as an immune-modulatory molecule interacting with the host immune system. Previously, we found that paramyosin from Clonorchis sinensis (CsPmy) is bound to human complement C9 protein (C9). To analyze the C9 binding region on CsPmy, overlapping recombinant fragments of CsPmy were produced and their binding activity to human C9 was investigated. The fragmental expression of CsPmy and C9 binding assays revealed that the C9 binding region was located at the C-terminus of CsPmy. Further analysis of the C-terminus of CsPmy to narrow the C9 binding region on CsPmy indicated that the region flanking731Leu–780 Leu was a potent C9 binding region. The CsPmy fragments corresponding to the region effectively inhibited human C9 polymerization. These results provide a precise molecular basis for CsPmy as a potent immunomodulator to evade host immune defenses by inhibiting complement attack.

Citations

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  • Transmission-Blocking Vaccines against Schistosomiasis Japonica
    Chika P. Zumuk, Malcolm K. Jones, Severine Navarro, Darren J. Gray, Hong You
    International Journal of Molecular Sciences.2024; 25(3): 1707.     CrossRef
  • What about the Cytoskeletal and Related Proteins of Tapeworms in the Host’s Immune Response? An Integrative Overview
    Diana G. Ríos-Valencia, Javier Ambrosio, Rocío Tirado-Mendoza, Julio César Carrero, Juan Pedro Laclette
    Pathogens.2023; 12(6): 840.     CrossRef
  • 3,513 View
  • 110 Download
  • Crossref
Bile Ductal Transcriptome Identifies Key Pathways and Hub Genes in Clonorchis sinensis-Infected Sprague-Dawley Rats
Won Gi Yoo, Jung-Mi Kang, Huong Giang L?, Jhang Ho Pak, Sung-Jong Hong, Woon-Mok Sohn, Byoung-Kuk Na
Korean J Parasitol 2020;58(5):513-525.
Published online October 22, 2020
DOI: https://doi.org/10.3347/kjp.2020.58.5.513
Clonorchis sinensis is a food-borne trematode that infects more than 15 million people. The liver fluke causes clonorchiasis and chronical cholangitis, and promotes cholangiocarcinoma. The underlying molecular pathogenesis occurring in the bile duct by the infection is little known. In this study, transcriptome profile in the bile ducts infected with C. sinensis were analyzed using microarray methods. Differentially expressed genes (DEGs) were 1,563 and 1,457 at 2 and 4 weeks after infection. Majority of the DEGs were temporally dysregulated at 2 weeks, but 519 DEGs showed monotonically changing expression patterns that formed seven distinct expression profiles. Protein-protein interaction (PPI) analysis of the DEG products revealed 5 sub-networks and 10 key hub proteins while weighted co-expression network analysis (WGCNA)-derived gene-gene interaction exhibited 16 co-expression modules and 13 key hub genes. The DEGs were significantly enriched in 16 Kyoto Encyclopedia of Genes and Genomes pathways, which were related to original systems, cellular process, environmental information processing, and human diseases. This study uncovered a global picture of gene expression profiles in the bile ducts infected with C. sinensis, and provided a set of potent predictive biomarkers for early diagnosis of clonorchiasis.

Citations

Citations to this article as recorded by  Crossref logo
  • Liver Fluke-Derived Molecules Accelerate Skin Repair Processes in a Mouse Model of Type 2 Diabetes Mellitus
    Anna Kovner, Yaroslav Kapushchak, Oxana Zaparina, Dmitry Ponomarev, Maria Pakharukova
    International Journal of Molecular Sciences.2024; 25(22): 12002.     CrossRef
  • Comparative liver transcriptome analysis in hamsters infected with food-borne trematodes Opisthorchis felineus, Opisthorchis viverrini, or Clonorchis sinensis
    Ekaterina A. Lishai, Oxana G. Zaparina, Yaroslav K. Kapushchak, Banchob Sripa, Sun-Jong Hong, Guofeng Cheng, Maria Y. Pakharukova, Feng Xue
    PLOS Neglected Tropical Diseases.2024; 18(12): e0012685.     CrossRef
  • Current status of Clonorchis sinensis and clonorchiasis in Korea: epidemiological perspectives integrating the data from human and intermediate hosts
    Won Gi Yoo, Woon-Mok Sohn, Byoung-Kuk Na
    Parasitology.2022; 149(10): 1296.     CrossRef
  • Transcriptomic profiling of three-dimensional cholangiocyte spheroids long term exposed to repetitive Clonorchis sinensis excretory-secretory products
    Jung-Woong Kim, Junyeong Yi, Jinhong Park, Ji Hoon Jeong, Jinho Kim, Jihee Won, Seok Chung, Tong-Soo Kim, Jhang Ho Pak
    Parasites & Vectors.2021;[Epub]     CrossRef
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  • 125 Download
  • 4 Web of Science
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Cytokine Production in Cholangiocarcinoma Cells in Response to Clonorchis sinensis Excretory-Secretory Products and Their Putative Protein Components
Jhang Ho Pak, Ji-Yun Lee, Bo Young Jeon, Fuhong Dai, Won Gi Yoo, Sung-Jong Hong
Korean J Parasitol 2019;57(4):379-387.
Published online August 31, 2019
DOI: https://doi.org/10.3347/kjp.2019.57.4.379
Clonorchis sinensis is a carcinogenic human liver fluke that promotes hepatic inflammatory environments via direct contact or through their excretory-secretory products (ESPs), subsequently leading to cholangitis, periductal fibrosis, liver cirrhosis, and even cholangiocarcinoma (CCA). This study was conducted to examine the host inflammatory responses to C. sinensis ESPs and their putative protein components selected from C. sinensis expressed sequenced tag (EST) pool databases, including TGF-β receptor interacting protein 1(CsTRIP1), legumain (CsLeg), and growth factor binding protein 2 (CsGrb2). Treatment of CCA cells (HuCCT1) with the ESPs or bacterial recombinant C. sinensis proteins differentially promoted the secretion of proinflammatory cytokines (IL-1β, IL-6, and TNF-α) as well as anti-inflammatory cytokines (IL-10, TGF-β1, and TGF-β2) in a time-dependent manner. In particular, recombinant C. sinensis protein treatment resulted in increase (at maximum) of ~7-fold in TGF-β1, ~30-fold in TGF-β2, and ~3-fold in TNF-α compared with the increase produced by ESPs, indicating that CsTrip1, CsLeg, and CsGrb2 function as strong inducers for secretion of these cytokines in host cells. These results suggest that C. sinensis ESPs contribute to the immunopathological response in host cells, leading to clonorchiasis-associated hepatobiliary abnormalities of greater severity.

Citations

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  • Immunogenomics of cholangiocarcinoma
    Virag Gehl, Colm J. O’Rourke, Jesper B. Andersen
    Hepatology.2025; 82(2): 522.     CrossRef
  • Clonorchis sinensis-driven hepatocarcinogenesis via E2F1-CD24 transcriptional axis: mechanistic and therapeutic implications
    Wen-Min Lu, Jin Yan, Zhao-Ji Liu, Yong Wu, Qian-Ru Cui, Ji Feng, Yu Chen, Guang-Zhi Zhu, Tao Peng, Jing Zhou, Guo-Dong Lu
    Parasites & Vectors.2025;[Epub]     CrossRef
  • The crosstalk between cholangiocytes and hepatic stellate cells promotes the progression of epithelial-mesenchymal transition and periductal fibrosis during Clonorchis sinensis infection
    Junyeong Yi, Ji Hoon Jeong, Jihee Won, Seok Chung, Jhang Ho Pak
    Parasites & Vectors.2024;[Epub]     CrossRef
  • Clonorchis sinensisinfection induces pathological changes in feline bile duct epithelium and alters biliary microbiota composition
    Feng Li, Yanli Zhang, Chunfu Li, Fenqi Li, Baojiang Gan, Hong Yu, Jian Li, Xinyu Feng, Wei Hu
    Parasite.2024; 31: 53.     CrossRef
  • Up-regulation of MDSCs accumulation and Th2 biased response to co-stimulation of CsESP from Clonorchis sinensis and HBeAg in vitro
    Qiannan Liu, Nian Wang, Hengchang Sun, Huimin Dong, Xuerong Li, Xinbing Yu, Yan Huang
    Acta Tropica.2024; 260: 107405.     CrossRef
  • The expression of sICAM-1 influenced by Clonorchis sinensis co-infection in CHB patients
    J. Qiu, M. Shang, W. Li, H. Zhang, Y. Liao, H. Dong
    Journal of Helminthology.2024;[Epub]     CrossRef
  • Genus Bithynia: morphological classification to molecular identification
    Guoyang Huang, Xiaohong Peng
    Parasites & Vectors.2024;[Epub]     CrossRef
  • Clonorchis sinensis granulin promotes malignant transformation of human intrahepatic biliary epithelial cells through interaction with M2 macrophages via regulation of STAT3  phosphorylation and the MEK/ERK pathway
    Qing He, Xiaowen Pan, Yingxuan Yin, Anyuan Xu, Xueqing Yi, Yinjuan Wu, Xuerong Li
    Parasites & Vectors.2023;[Epub]     CrossRef
  • Recombinant protein EBI3 attenuates Clonorchis sinensis-induced liver fibrosis by inhibiting hepatic stellate cell activation in mice
    Lei Zhao, Jia Li, Gang Mo, Deping Cao, Chun Li, Guoyang Huang, Liping Jiang, Gen Chen, Hongbing Yao, Xiaohong Peng
    Parasites & Vectors.2023;[Epub]     CrossRef
  • Cancerogenic parasites in veterinary medicine: a narrative literature review
    Niccolò Fonti, Francesca Parisi, Francesca Mancianti, Giulia Freer, Alessandro Poli
    Infectious Agents and Cancer.2023;[Epub]     CrossRef
  • Molecular Mechanisms of Clonorchis sinensis-Host Interactions and Implications for Vaccine Development
    Stephane Koda, Xing-Quan Zhu, Kui-Yang Zheng, Chao Yan
    Frontiers in Cell and Developmental Biology.2022;[Epub]     CrossRef
  • Roles of microRNAs and Long Non-Coding RNAs Encoded by Parasitic Helminths in Human Carcinogenesis
    Ana Gabriela Leija-Montoya, Javier González-Ramírez, Gustavo Martínez-Coronilla, María Esther Mejía-León, Mario Isiordia-Espinoza, Fausto Sánchez-Muñoz, Elda Georgina Chávez-Cortez, Viviana Pitones-Rubio, Nicolas Serafín-Higuera
    International Journal of Molecular Sciences.2022; 23(15): 8173.     CrossRef
  • The role of helminths in the development of non-communicable diseases
    Yifan Wu, Megan Duffey, Saira Elizabeth Alex, Charlie Suarez-Reyes, Eva H. Clark, Jill E. Weatherhead
    Frontiers in Immunology.2022;[Epub]     CrossRef
  • Spirocerca lupi Proteomics and Its Role in Cancer Development: An Overview of Spirocercosis-Induced Sarcomas and Revision of Helminth-Induced Carcinomas
    Catalina Porras-Silesky, María José Mejías-Alpízar, Javier Mora, Gad Baneth, Alicia Rojas
    Pathogens.2021; 10(2): 124.     CrossRef
  • The Dark Side of the Force: When the Immune System Is the Fuel of Tumor Onset
    Elisabeth Digifico, Silvia Balinzo, Cristina Belgiovine
    International Journal of Molecular Sciences.2021; 22(3): 1224.     CrossRef
  • Tumor-associated macrophages in cholangiocarcinoma: complex interplay and potential therapeutic target
    Menghua Zhou, Chaoqun Wang, Shounan Lu, Yanan Xu, Zihao Li, Hongchi Jiang, Yong Ma
    EBioMedicine.2021; 67: 103375.     CrossRef
  • Omega-Class Glutathione Transferases of Carcinogenic Liver Fluke, Clonorchis sinensis, Modulate Apoptosis and Differentiation of Host Cholangiocytes
    Chun-Seob Ahn, Jeong-Geun Kim, Insug Kang, Yoon Kong
    Antioxidants.2021; 10(7): 1017.     CrossRef
  • Clonorchis sinensis and clonorchiasis
    Byoung-Kuk Na, Jhang Ho Pak, Sung-Jong Hong
    Acta Tropica.2020; 203: 105309.     CrossRef
  • CD19+CD1dhiCD5hi B Cells Can Downregulate Malaria ITV Protection by IL-10 Secretion
    Hongli Guan, Jiacong Peng, Liping Jiang, Gang Mo, Xiang Li, Xiaohong Peng
    Frontiers in Public Health.2020;[Epub]     CrossRef
  • Dopaminergic antagonists inhibit bile chemotaxis of adult Clonorchis sinensis and its egg production
    Fuhong Dai, Jin-Ho Song, Yeon Pyo Hong, Xuelian Bai, Woon-Mok Sohn, Sung-Jong Hong, jong-Yil Chai
    PLOS Neglected Tropical Diseases.2020; 14(3): e0008220.     CrossRef
  • Identification and Analysis of the Tegument Protein and Excretory-Secretory Products of the Carcinogenic Liver Fluke Clonorchis sinensis
    Yunliang Shi, Kai Yu, Anli Liang, Yan Huang, Fangqi Ou, Haiyan Wei, Xiaoling Wan, Yichao Yang, Weiyu Zhang, Zhihua Jiang
    Frontiers in Microbiology.2020;[Epub]     CrossRef
  • Bile Ductal Transcriptome Identifies Key Pathways and Hub Genes in Clonorchis sinensis-Infected Sprague-Dawley Rats
    Won Gi Yoo, Jung-Mi Kang, Huong Giang Lê, Jhang Ho Pak, Sung-Jong Hong, Woon-Mok Sohn, Byoung-Kuk Na
    The Korean Journal of Parasitology.2020; 58(5): 513.     CrossRef
  • 7,554 View
  • 142 Download
  • 23 Web of Science
  • Crossref
Tissue Fluid Enzyme-Linked Immunosorbant Assay for Piglets Experimentally Infected with Toxoplasma gondii and Survey on Local and Imported Pork in Korean Retail Meat Markets
Won Gi Yoo, Sun-Min Kim, Eun Jeong Won, Ji-Yun Lee, Fuhong Dai, Ho Choon Woo, Ho-Woo Nam, Tae Im Kim, Jeong-Hee Han, Dongmi Kwak, Yun Sang Cho, Seung-Won Kang, Tong-Soo Kim, Xing-Quan Zhu, Chunren Wang, Heejeong Youn, Sung-Jong Hong
Korean J Parasitol 2018;56(5):437-446.
Published online October 31, 2018
DOI: https://doi.org/10.3347/kjp.2018.56.5.437
To investigate the prevalence of Toxoplasma gondii in pork on the market in Korea, an in-house enzyme-linked immunosorbent assay for tissue fluid (CAU-tf-ELISA) was developed using a soluble extract of T. gondii RH strain tachyzoites. As the standard positive controls, the piglets were experimentally infected with T. gondii: Group A (1,000 cysts-containing bradyzoites), Group B (500 cysts-containing bradyzoites) and Group C (1.0×103 or 1.0×104 tachyzoites). The CAU-tf-ELISA demonstrated infection intensity-dependent positivity toward tissue fluids with average cut-off value 0.15: 100% for Group A, 93.8% for Group B and 40.6% for Group C. When tissue-specific cut-off values 0.066-0.199 were applied, CAU-tf-ELISA showed 96.7% sensitivity, 100% specificity, 100% positive and 90.0% negative predictive values. When compared with the same tissue fluids, performance of CAU-tf-ELISA was better than that of a commercial ELISA kit. Of the 583 Korea domestic pork samples tested, anti-T. gondii antibodies were detected from 9.1% of whole samples and 37.9% from skirt meat highest among pork parts. In the 386 imported frozen pork samples, 1.8% (skirt meat and shoulder blade) were positive for anti-T. gondii antibodies. In Korea, prevalence of anti-T. gondii antibodies in the pork on retail markets appeared high, suggesting that regulations on pig farming and facilities are necessary to supply safe pork on the tables.

Citations

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  • Molecular survey of Toxoplasma gondii B1 gene in pigs from various localities in Korea
    Dongmi Kwak, Min-Goo Seo
    Parasites, Hosts and Diseases.2024; 62(3): 294.     CrossRef
  • Foodborne transmission of Toxoplasma gondii infection in the last decade. An overview
    S. Almeria, J.P. Dubey
    Research in Veterinary Science.2021; 135: 371.     CrossRef
  • Descriptive Comparison of ELISAs for the Detection of Toxoplasma gondii Antibodies in Animals: A Systematic Review
    K. L. D. Tharaka D. Liyanage, Anke Wiethoelter, Jasmin Hufschmid, Abdul Jabbar
    Pathogens.2021; 10(5): 605.     CrossRef
  • All about Toxoplasma gondii infections in pigs: 2009–2020
    Jitender P. Dubey, Camila K. Cerqueira-Cézar, Fernando H.A. Murata, Oliver C.H. Kwok, Dolores Hill, Yurong Yang, Chunlei Su
    Veterinary Parasitology.2020; 288: 109185.     CrossRef
  • WITHDRAWN: All about Toxoplasma gondii infections in pigs: the past decade
    Jitender P. Dubey, Camila K. Cerqueira-Cézar, Fernando H.A. Murata, Oliver C.H. Kwok, Dolores Hill, Yurong R. Yang, Chunlei Su
    Veterinary Parasitology.2020; : 109182.     CrossRef
  • 9,871 View
  • 142 Download
  • 4 Web of Science
  • Crossref