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Genotype analysis of Cryptosporidium spp. prevalent in a rural village in Hwasun-gun, Republic of Korea
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Original Article

Genotype analysis of Cryptosporidium spp. prevalent in a rural village in Hwasun-gun, Republic of Korea

The Korean Journal of Parasitology 2006;44(1):27-33.
Published online: March 20, 2006

1Department of Parasitology and Tropical Medicine, Seoul National University College of Medicine, and Institute of Endemic Diseases, Seoul National University Medical Research Center, Seoul 110-799, Korea.

2Department of Parasitology, Kangwon National University College of Medicine, Chuncheon, Gangwon-do 200-701, Korea.

Corresponding author (cjy@snu.ac.kr)
• Received: December 28, 2005   • Accepted: January 25, 2006

Copyright © 2006 by The Korean Society for Parasitology

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Genotype analysis of Cryptosporidium spp. prevalent in a rural village in Hwasun-gun, Republic of Korea
Korean J Parasitol. 2006;44(1):27-33.   Published online March 20, 2006
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Genotype analysis of Cryptosporidium spp. prevalent in a rural village in Hwasun-gun, Republic of Korea
Korean J Parasitol. 2006;44(1):27-33.   Published online March 20, 2006
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Genotype analysis of Cryptosporidium spp. prevalent in a rural village in Hwasun-gun, Republic of Korea
Image
Fig. 1 Gel electrophoresis of nested PCR-RFLP based on the small subunit (SSU) rRNA gene of Cryptosporidium. Stained with ethidium bromide on 2% agarose gel. The species of Cryptosporidium was determined by digestion with endonuclease, Ssp I (B) or Vsp I (C), of nested PCR products (A). Most of isolates had both C. hominis and C. parvum patterns (B, C). The white arrowhead (ca. 628 bp) is C. parvum-specific and the black arrowhead (ca. 556 bp) indicates C. hominis-specific bands obtained by Vsp I (C) digestion. M, DNA size marker; lanes 1-5, isolates from villagers; lanes 6-11, isolates from domestic cattle; lanes 12-14, isolates from domestic goats.
Genotype analysis of Cryptosporidium spp. prevalent in a rural village in Hwasun-gun, Republic of Korea
Villagers1)
Cattle
Goats
No. examined No. (%) positive No. examined No. (%) positive No. examined No. (%) positive
27 7 (25.9) 17 7 (41.2) 7 3 (42.9)
Sequence origin at GenBank (isolate name) Host Location of mutations in the SSU rRNA genea)
260-267 37-653 680-699
C. hominis (sample no. 1; Fig. 1)b) Human AAT––T––AAT––G AAAATATTTTTGAT-GAAT ATTACTATTTTTT––-TTTTTAG
C. hominis (sample no. 11; Fig. 1)c) Cattle AAT––T––AAT––G AAAATATTTTTGAT-GAAT ATTACTATTTTTT––-TTTTTAG
C. hominis (sample no. 16; Fig. 1)d) Goat AAT––T––AAT––G AAAATATTTTTGAT-GAAT ATTACTATTTTTT––-TTTTTAG
C. hominis (HCNV4) Human AAT––T––AAT––G AAAATATTTT-GAT-GAAT ATTACTATTTTTT––-TTTTTAG
C. hominis (H7) Human AAT––T––AAT––G AAAATATTTT-GAT-GAAT ATTACTATTTTTT––-TTTTTAG
C. hominis (L16997) Human AAT––T––AAT––G AAAATATTTT-GAT-GAAT ATTACTATTTTTT––-TTTTTAG
C. parvum (C1) Bovine ATT––A––AAT––G AAAATATTTT-GAT-GAAT ATTACTATATATT––-TTAGTAT
C. parvum (BOH6) Bovine ATT––A––AAT––G AAAATATTTT-GAT-GAAT ATTACTATATATT––-TTAGTAT
C. parvum (MT) Bovine ATT––A––AAT––G AAAATATTTT-GAT-GAAT ATTACTATATATT––-TTAGTAT
C. parvum (TAMU) Bovine ATT––A––AAT––G AAAATATTTT-GAT-GAAT ATTACTATATATT––-TTAGTAT
C. parvum (UCP) Bovine ATT––A––AAT––G AAAATATTTT-GAT-GAAT ATTACTATATATT––-TTAGTAT
C. parvum (GCH1) Bovine ATT––A––AAT––G AAAATATTTT-GAT-GAAT ATTACTATATATT––-TTAGTAT
C. parvum (IOWA) Bovine ATT––A––AAT––G AAAATATTTT-GAT-GAAT ATTACTATATATT––-TTAGTAT
C. parvum (L16996) Bovine ATT––A––AAT––G AAAATATTTT-GAT-GAAT ATTACTATATATT––-TTAGTAT
C. parvum Deer ATT––A––AAT––G AAAATATTTT-GAT-GAAT ATTACTATATATT––-TTAGTAT
C. parvum Dog ATT––TT––AT––G ATAATATTTAA––––-CAT ATTACTAT––––––––TTAT-AG
C. parvum Ferret ATA––A––ATT––G AAAATATTTT-GAT-TAAT ATTACTAAATTTT––-TGTTTGG
C. parvum Mouse ATT––A––AAT––G AAAATATTTT-AAT-TAAT ATTACTATA-ATT––-ATTTT-T
C. parvum Pig ATT––TTTAAT––G ATAATATTTTT––––-AAT ATTACTATAATTT––-TTATTAG
C. parvum Monkey AAT––T––AAT––G AATATATTTT-GAT-GAAT ATTACTATTTTTT––-TTTA-GT
C. baileyi Chicken A––––TTTA––-TG ACAATACCAC––––––GGT ATTACT––T––––-A––-TTTAA
C. felis (C8) Feline AATAATTTATTTTG ATAATATTTTTTTTTAAAT ATTTTTTAAGACTGAATTTTTAG
C. meleagridis Turkey AAT––T––TAT––G ATAATATTTG––AT-TAAT ATTACTAAATTTA––-TTAGTAT
C. muris Rat ATC––TCTGA––TG ATAATATTACCAA––-GGT ACTATTATATTCTAAAT––––AT
C. serpentis Snake ATC––TCTGA––TG ATAATATTATTAA––-GGT ACTATTATATTTTTAAT––––AT
C. wrairi Guinea pig ATA––A––ATT––G ATAATATTTT––GA-AAAT ATTACTATATATT––-TTTA-GT
Table 1. Prevalence of Cryptosporidium spp. among people and domestic animals in the study area, Ssangbong-ri, Iyang-myon, Hwasun-gun, Jeollanam-do

Human fecal samples were collected from villagers who were oocyst positive more than twice in a long-term survey conducted from November 1996 to October 1997 (Chai et al., 2001).

Table 2. Sequence alignments of Cryptosporidium spp. small subunit (SSU) rRNA partial gene deposited at GenBank

The nucleotide positions of aligned sequences are numbered using sequences of the C. hominis HCNV4 isolate in the SSU rRNA gene.

GenBank accession No.: DQ054817.

Genbank accession No.: DQ054818.

Genbank accession No.: DQ054819.